Processing Module
=================

The processing module provides tools for image preprocessing and analysis, including denoising, segmentation, and partitioning capabilities for various microscopy modalities.

This module contains three main components:

* **Denoising**: Advanced noise reduction algorithms for microscopy data
* **Segmentation**: Deep learning-based and classical cellular structure segmentation methods for multiple imaging modalities
* **Partitioning**: Tools for spatial organization partitioning

The processing module is designed to handle data from various microscopy techniques including:

- Soft X-ray Tomography (SXT)
- Cryo-Electron Tomography (cryo-ET) 
- Structured Illumination Microscopy (SIM)
- Cryo-Electron Microscopy (cryo-EM)
- Confocal microscopy
- Airyscan microscopy


.. toctree::
   :maxdepth: 2

   denoising
   segmentation/segmentation
   partitioning